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8CI7

Apo-crystal structure of a wild-type South African HIV-1 subtype C protease at 2.4 angstrom

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSEALED TUBE
Source detailsBRUKER IMUS 3.0 MICROFOCUS
Temperature [K]100
Detector technologyPIXEL
Collection date2022-10-26
DetectorBruker PHOTON III
Wavelength(s)1.5418
Spacegroup nameP 41 21 2
Unit cell lengths46.600, 46.600, 102.144
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution22.390 - 2.400
R-factor0.2059
Rwork0.203
R-free0.22100
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle0.563
Data reduction softwareSAINT
Data scaling softwareSADABS
Phasing softwarePHASER
Refinement softwarePHENIX (1.15.2_3472)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]22.3902.490
High resolution limit [Å]2.4002.400
Rmerge0.138
Rmeas0.175
Rpim0.106
Number of reflections4659433
<I/σ(I)>9.7
Completeness [%]97.2
Redundancy4.5
CC(1/2)0.9910.462
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52935 mg/mL of wild-type South African HIV-1 subtype C protease in 10 mM of sodium acetate at pH 5 with the crystallization condition consisting of 0.1 M of bis-Tris at pH 6.5 and 3.0 M of NaCl

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PDB entries from 2024-06-26

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