8C6R
PBP AccA from A. tumefaciens Bo542 in apoform 4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 2 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-26 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97856 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 53.339, 59.341, 181.378 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 26.940 - 1.884 |
R-factor | 0.21 |
Rwork | 0.208 |
R-free | 0.25070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zeb |
RMSD bond length | 0.009 |
RMSD bond angle | 1.050 |
Data reduction software | autoPROC |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.4) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.689 | 90.689 | 2.145 |
High resolution limit [Å] | 1.884 | 6.905 | 1.884 |
Rmerge | 0.140 | 0.045 | 1.532 |
Rmeas | 0.146 | 0.047 | 1.614 |
Rpim | 0.041 | 0.013 | 0.495 |
Total number of observations | 282491 | 13455 | 11289 |
Number of reflections | 21932 | 1097 | 1098 |
<I/σ(I)> | 12.5 | 38.37 | 1.68 |
Completeness [%] | 91.5 | 99.6 | 64.9 |
Completeness (spherical) [%] | 46.2 | 99.6 | 7.3 |
Completeness (ellipsoidal) [%] | 91.5 | 99.6 | 64.9 |
Redundancy | 12.88 | 12.27 | 10.28 |
CC(1/2) | 0.998 | 0.999 | 0.587 |
Anomalous completeness (spherical) | 43.8 | 100.0 | 6.1 |
Anomalous completeness | 90.9 | 100.0 | 62.1 |
Anomalous redundancy | 7.0 | 7.5 | 5.8 |
CC(ano) | -0.149 | -0.395 | -0.035 |
|DANO|/σ(DANO) | 0.8 | 0.6 | 0.7 |
Diffraction limits | Principal axes of ellipsoid fitted to diffraction cut-off surface |
3.219 Å | 1.000, 1.000, 1.000 |
2.323 Å | 0.000, 0.000, 0.000 |
1.811 Å | 0.000, 0.000, 0.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 292 | PEG 4000, Na citrate and AcNH4 |