8C62
Crystal structure of cisplatin/B-DNA adduct
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-02-17 |
Detector | DECTRIS PILATUS3 X 2M |
Wavelength(s) | 0.8731 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 24.725, 41.001, 66.483 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.170 - 2.310 |
R-factor | 0.23488 |
Rwork | 0.231 |
R-free | 0.26644 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 1.730 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0403) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.170 | 2.350 |
High resolution limit [Å] | 2.310 | 2.310 |
Number of reflections | 3221 | 148 |
<I/σ(I)> | 22 | 2.5 |
Completeness [%] | 99.1 | 100 |
Redundancy | 12 | 13.1 |
CC(1/2) | 1.000 | 0.900 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | MPD 7 % v/v, MgCl2 20 mM, spermine tetrahydrochloride 80 mM, sodium cacodylate 60 mM, pH 6.5. Equilibrated against a reservoir containing MPD 50 % v/v |