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8C62

Crystal structure of cisplatin/B-DNA adduct

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2022-02-17
DetectorDECTRIS PILATUS3 X 2M
Wavelength(s)0.8731
Spacegroup nameP 21 21 21
Unit cell lengths24.725, 41.001, 66.483
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution23.170 - 2.310
R-factor0.23488
Rwork0.231
R-free0.26644
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.003
RMSD bond angle1.730
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0403)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]23.1702.350
High resolution limit [Å]2.3102.310
Number of reflections3221148
<I/σ(I)>222.5
Completeness [%]99.1100
Redundancy1213.1
CC(1/2)1.0000.900
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293MPD 7 % v/v, MgCl2 20 mM, spermine tetrahydrochloride 80 mM, sodium cacodylate 60 mM, pH 6.5. Equilibrated against a reservoir containing MPD 50 % v/v

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PDB entries from 2024-07-17

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