8C3E
Engineered mini-protein LCB2 (blocking ligand of SARS-Cov-2 spike protein)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | RIGAKU PhotonJet-S |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-07-07 |
Detector | RIGAKU HyPix-6000HE |
Wavelength(s) | 1.54184 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 57.817, 57.817, 41.540 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.070 - 2.100 |
R-factor | 0.2202 |
Rwork | 0.211 |
R-free | 0.24560 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.362 |
Data reduction software | autoPROC |
Data scaling software | autoPROC |
Phasing software | PHENIX (1.20.1_4487) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.070 | 2.141 |
High resolution limit [Å] | 2.100 | 2.105 |
Rmerge | 0.156 | 0.610 |
Rmeas | 0.164 | 0.641 |
Rpim | 0.051 | 0.194 |
Number of reflections | 4881 | 234 |
<I/σ(I)> | 16 | 4 |
Completeness [%] | 99.9 | 100 |
Redundancy | 10.2 | 10.7 |
CC(1/2) | 0.997 | 0.859 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.8 | 291 | 0.1M Sodium acetate ph4.8, 50mM Ammonium Sulfate, 5% PEG4000 |