8BUQ
Structure of DDB1 bound to DS43-engaged CDK12-cyclin K
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-19 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 250.162, 250.162, 218.849 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 54.300 - 3.200 |
R-factor | 0.196 |
Rwork | 0.195 |
R-free | 0.21560 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.626 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 216.647 | 3.393 |
High resolution limit [Å] | 3.199 | 3.199 |
Number of reflections | 105078 | 5252 |
<I/σ(I)> | 14.6 | |
Completeness [%] | 96.4 | |
Redundancy | 21 | |
CC(1/2) | 0.999 | 0.463 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.9 M ammonium citrate tribasic pH 7.0, Jeff600 additive |