8BPQ
crystal structure of N-ethylmaleimide reductase with mutation Y187F (nemA Y187F) from Escherichia coli
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 77 |
Detector technology | PIXEL |
Collection date | 2022-01-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.88560 |
Spacegroup name | P 32 |
Unit cell lengths | 96.062, 96.062, 100.350 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 24.270 - 2.300 |
R-factor | 0.1955 |
Rwork | 0.193 |
R-free | 0.24460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3p7y |
Data reduction software | XDS (Built=20200417) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 24.271 | 24.271 | 2.210 |
High resolution limit [Å] | 2.100 | 6.640 | 2.100 |
Rmerge | 0.150 | 1.222 | |
Rmeas | 0.467 | 0.159 | 1.285 |
Rpim | 0.148 | 0.053 | 0.396 |
Total number of observations | 9113 | 47747 | |
Number of reflections | 45797 | 1082 | 4566 |
<I/σ(I)> | 6.4 | 12 | 2.4 |
Completeness [%] | 99.9 | 98.1 | 100 |
Redundancy | 9.9 | 8.4 | 10.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 288.15 | 0.2 M Potassium bromide, 0.2 M Potassium thiocyanate, 0.1 M Tris pH 7.8, 3 % w/v PGA (Na+ form, LM) 2 % w/v PEG 3350 5 mM Tb-XO4 |