8BP5
Crystal structure of Trichoplax Dlg PDZ1 domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 34.962, 52.632, 43.005 |
Unit cell angles | 90.00, 92.93, 90.00 |
Refinement procedure
Resolution | 42.950 - 2.130 |
R-factor | 0.1946 |
Rwork | 0.192 |
R-free | 0.24180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3rl7 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.550 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.950 | 2.190 |
High resolution limit [Å] | 2.130 | 2.130 |
Rmerge | 0.036 | 0.147 |
Number of reflections | 8858 | 718 |
<I/σ(I)> | 20.7 | |
Completeness [%] | 99.6 | |
Redundancy | 6.7 | |
CC(1/2) | 1.000 | 0.989 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 2.5 M D-L Malic acid, pH 7.0 |