8BP4
Crystal structure of Trichoplax Scribble PDZ2 domain in complex with Trichoplax Vangl peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-11 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.303, 43.387, 71.316 |
Unit cell angles | 90.00, 91.08, 90.00 |
Refinement procedure
Resolution | 42.300 - 1.150 |
R-factor | 0.1799 |
Rwork | 0.178 |
R-free | 0.21080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7jo7 |
RMSD bond length | 0.018 |
RMSD bond angle | 1.459 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 43.390 | 1.170 |
High resolution limit [Å] | 1.150 | 1.150 |
Rmerge | 0.035 | 1.328 |
Number of reflections | 91308 | 4253 |
<I/σ(I)> | 7.5 | |
Completeness [%] | 99.5 | |
Redundancy | 3.6 | |
CC(1/2) | 0.999 | 0.337 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.2 M ammonium sulphate, PEG 4000 |