8BJ6
Crystal structure of YopR
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2021-05-20 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9718 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 189.682, 108.007, 53.601 |
Unit cell angles | 90.00, 90.36, 90.00 |
Refinement procedure
Resolution | 94.840 - 2.600 |
R-factor | 0.21977 |
Rwork | 0.218 |
R-free | 0.25450 |
Structure solution method | SAD |
RMSD bond length | 0.012 |
RMSD bond angle | 1.518 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | CRANK2 |
Refinement software | REFMAC (v7.0) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 94.840 | 2.740 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmeas | 0.095 | 0.460 |
Rpim | 0.037 | 0.194 |
Total number of observations | 209837 | 26583 |
Number of reflections | 32678 | 4555 |
<I/σ(I)> | 12.5 | 3.8 |
Completeness [%] | 98.2 | |
Redundancy | 6.4 | 5.8 |
CC(1/2) | 0.998 | 0.933 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | 20% (w/v) PEG 8000, 100 mM Sodium phosphate dibasic/ Citric acid pH 4.2, 200 mM Sodium chloride |