8BEQ
Structure of fructofuranosidase from Rhodotorula dairenensis
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979257 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 103.383, 108.235, 196.599 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.450 - 2.070 |
R-factor | 0.1736 |
Rwork | 0.172 |
R-free | 0.20920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4eqv |
RMSD bond length | 0.008 |
RMSD bond angle | 1.424 |
Data reduction software | XDS (Version January 31, 2020) |
Data scaling software | XDS (Version January 31, 2020) |
Phasing software | MOLREP (7.0.077) |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.450 | 2.120 |
High resolution limit [Å] | 2.070 | 2.070 |
Rmerge | 0.145 | 0.666 |
Rmeas | 0.161 | 0.742 |
Rpim | 0.069 | 0.321 |
Number of reflections | 66921 | 4459 |
<I/σ(I)> | 9.9 | 3.5 |
Completeness [%] | 99.5 | 99.9 |
Redundancy | 5.5 | 5.4 |
CC(1/2) | 0.993 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 291 | 25% PEG 3350, 0.2 M ammonium acetate, 0.1 M Bis-Tris pH 5.5. Cryocooling: mother liquor solution supplemented with 15% glycerol. 8 mg mL-1 protein concentration and 2:1 (protein: reservoir) rate. |