8BDJ
VCB in complex with compound 30
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-08 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 41 2 2 |
Unit cell lengths | 93.334, 93.334, 365.296 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 91.330 - 2.020 |
R-factor | 0.1964 |
Rwork | 0.194 |
R-free | 0.23940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5nw1 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.821 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.330 | 2.168 |
High resolution limit [Å] | 2.016 | 2.016 |
Rmerge | 0.135 | 2.690 |
Rmeas | 0.138 | 2.799 |
Rpim | 0.027 | 0.772 |
Number of reflections | 88515 | 4426 |
<I/σ(I)> | 14.8 | |
Completeness [%] | 100.0 | |
Redundancy | 26.6 | 24.4 |
CC(1/2) | 0.998 | 0.630 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 10-20% PEG 8000, 0.2 M magnesium acetate and 0.1 M sodium cacodylate pH 6.5, 1 mM Compound soak |