8BBW
Crystal structure of medical leech destabilase (low salt)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-08 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.07228 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 26.390, 35.870, 54.470 |
Unit cell angles | 90.00, 92.27, 90.00 |
Refinement procedure
Resolution | 29.950 - 1.400 |
R-factor | 0.1563 |
Rwork | 0.154 |
R-free | 0.19300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2dqa |
RMSD bond length | 0.014 |
RMSD bond angle | 1.403 |
Data reduction software | XDS (20161205) |
Data scaling software | XSCALE (20191015) |
Phasing software | PHASER (2.8.4) |
Refinement software | PHENIX (1.18_3855) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.950 | 29.950 | 1.440 |
High resolution limit [Å] | 1.400 | 6.260 | 1.400 |
Rmeas | 0.121 | 0.049 | 1.635 |
Number of reflections | 19404 | 242 | 1396 |
<I/σ(I)> | 9.8 | 29.95 | 1.3 |
Completeness [%] | 95.8 | 98.4 | 93.4 |
Redundancy | 6.7 | 6.8 | 6.4 |
CC(1/2) | 0.998 | 0.997 | 0.513 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 0.01 M Tris-HCl, 0.3 M NaCl, 27.5% w/v PEG 4000, 72 mM gamma-Glu-epsilon-Lys dipeptide |