8BBN
SARS-CoV-2 Delta-RBD complexed with BA.2-10 and EY6A Fabs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-05 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97628 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 170.655, 171.691, 176.991 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.790 - 3.580 |
R-factor | 0.268 |
Rwork | 0.265 |
R-free | 0.31390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7nx6 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.523 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 57.000 | 3.650 |
High resolution limit [Å] | 3.580 | 3.580 |
Rmerge | 0.467 | |
Rpim | 0.130 | |
Number of reflections | 61670 | 2966 |
<I/σ(I)> | 4.1 | 0.3 |
Completeness [%] | 100.0 | 97.2 |
Redundancy | 13.8 | |
CC(1/2) | 0.992 | 0.301 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 10% (v/v) 2-propanol, 0.1 M BICINE, pH 8.5 and 30% (w/v) PEG 1500 |