8B9T
Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-08-09 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95372 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 70.611, 70.611, 140.782 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.230 - 2.500 |
R-factor | 0.2747 |
Rwork | 0.274 |
R-free | 0.28120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6xa6 |
RMSD bond length | 0.015 |
RMSD bond angle | 1.612 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.230 | 2.589 |
High resolution limit [Å] | 2.500 | 2.500 |
Rmerge | 0.101 | 1.363 |
Number of reflections | 7707 | 732 |
<I/σ(I)> | 23.29 | 1.61 |
Completeness [%] | 99.4 | 97.98 |
Redundancy | 6.2 | |
CC(1/2) | 0.999 | 0.939 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293.15 | 2.5 M NaCl, 0.1 m Na HEPES pH 8.0 |