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8B8I

Nanobody (NbLumSyt1) bound to human Syt1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04
Synchrotron siteDiamond
BeamlineI04
Temperature [K]100
Detector technologyPIXEL
Collection date2022-07-29
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.976
Spacegroup nameP 1 21 1
Unit cell lengths87.955, 100.226, 103.939
Unit cell angles90.00, 100.83, 90.00
Refinement procedure
Resolution59.110 - 2.750
Rwork0.263
R-free0.29770
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6i2g
RMSD bond length0.007
RMSD bond angle1.185
Data reduction softwareDIALS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0352)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]60.5702.850
High resolution limit [Å]2.7502.750
Number of reflections462464523
<I/σ(I)>10.3
Completeness [%]100.0
Redundancy6.7
CC(1/2)0.9980.898
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2941.6 M DL-malic acid

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PDB entries from 2024-05-15

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