8B5F
Human cathepsin B in complex with the carbamate inhibitor 31
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 30.573, 81.565, 93.520 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.760 - 1.700 |
R-factor | 0.1762 |
Rwork | 0.175 |
R-free | 0.20510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 8b4t |
RMSD bond length | 0.011 |
RMSD bond angle | 1.667 |
Data reduction software | XDS (1.12) |
Data scaling software | XSCALE (20220220) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.760 | 46.760 | 1.800 |
High resolution limit [Å] | 1.700 | 5.070 | 1.700 |
Rmerge | 0.247 | 0.054 | 3.160 |
Rmeas | 0.257 | 0.057 | 3.291 |
Total number of observations | 342373 | ||
Number of reflections | 26540 | 1112 | 4187 |
<I/σ(I)> | 9.34 | 37.07 | 0.83 |
Completeness [%] | 99.9 | 99.7 | 99.7 |
Redundancy | 12.9 | 11.38 | 12.851 |
CC(1/2) | 0.997 | 0.999 | 0.330 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 291 | 0.1 M Sodium Acetate pH 5.5, 30% PEG 5000 MME |