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8B5F

Human cathepsin B in complex with the carbamate inhibitor 31

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-10
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.918
Spacegroup nameP 21 21 21
Unit cell lengths30.573, 81.565, 93.520
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution46.760 - 1.700
R-factor0.1762
Rwork0.175
R-free0.20510
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)8b4t
RMSD bond length0.011
RMSD bond angle1.667
Data reduction softwareXDS (1.12)
Data scaling softwareXSCALE (20220220)
Phasing softwareMOLREP (11.7.02)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]46.76046.7601.800
High resolution limit [Å]1.7005.0701.700
Rmerge0.2470.0543.160
Rmeas0.2570.0573.291
Total number of observations342373
Number of reflections2654011124187
<I/σ(I)>9.3437.070.83
Completeness [%]99.999.799.7
Redundancy12.911.3812.851
CC(1/2)0.9970.9990.330
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.52910.1 M Sodium Acetate pH 5.5, 30% PEG 5000 MME

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PDB entries from 2024-07-10

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