8B21
Time-resolved structure of K+-dependent Na+-PPase from Thermotoga maritima 0-60-seconds post reaction initiation with Na+
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-18 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.9768 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 84.022, 110.051, 107.405 |
Unit cell angles | 90.00, 108.03, 90.00 |
Refinement procedure
Resolution | 102.130 - 2.590 |
R-factor | 0.2203 |
Rwork | 0.220 |
R-free | 0.23610 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4av3 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.564 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 102.130 | 2.890 |
High resolution limit [Å] | 2.570 | 2.570 |
Number of reflections | 37297 | 1868 |
<I/σ(I)> | 12.2 | |
Completeness [%] | 93.8 | |
Redundancy | 48.1 | |
CC(1/2) | 0.996 | 0.519 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 60 mM Tris-HCl pH 8.0, 26% v/v PEG400, 175 mM KCl, 2.4 mM MgCl2, 2 mM K4PPi, 20 mM NaCl |