8AZP

Structure of SARS-CoV-2 NSP3 macrodomain in complex with beta-methyl-ADP

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
Synchrotron site	PETRA III, EMBL c/o DESY
Beamline	P13 (MX1)
Temperature [K]	100
Detector technology	PIXEL
Collection date	2022-08-22
Detector	DECTRIS EIGER X 16M
Wavelength(s)	0.9763
Spacegroup name	P 21 21 21
Unit cell lengths	59.543, 75.094, 82.831
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	48.350 - 1.600
R-factor	0.191
Rwork	0.190
R-free	0.21070
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	6wen
RMSD bond length	0.007
RMSD bond angle	0.978
Data reduction software	XDS (VERSION Jan 10, 2022)
Data scaling software	Aimless
Phasing software	PHASER
Refinement software	PHENIX (1.20.1_4487)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	48.350	1.657
High resolution limit [Å]	1.600	1.600
Number of reflections	49126	4759
<I/σ(I)>	17.03	3.17
Completeness [%]	98.6
Redundancy	13.2
CC(1/2)	0.999	0.948

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP	8.2	291	1.8 M K2HPO4/NaH2PO4