8AWN
Crystal structure of a manganese-containing cupin (tm1459) from Thermotoga maritima, variant C106Q
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 5.2R |
Synchrotron site | ELETTRA |
Beamline | 5.2R |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-08 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.000 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 53.266, 53.266, 115.326 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.660 - 1.450 |
R-factor | 0.1441 |
Rwork | 0.142 |
R-free | 0.17330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1vj2 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.179 |
Data reduction software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.660 | 1.502 |
High resolution limit [Å] | 1.450 | 1.450 |
Rmerge | 0.048 | 0.911 |
Rpim | 0.017 | 0.363 |
Number of reflections | 56128 | 2932 |
<I/σ(I)> | 24.33 | 1.84 |
Completeness [%] | 99.9 | |
Redundancy | 8.9 | |
CC(1/2) | 1.000 | 0.731 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 289 | 1 M LiCl 0.1 M citrate pH 4.0 20 % PEG6000 16 mg/ml protein concentration |