8AVH
Crystal structure of IsdG from Bacillus cereus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-31 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.969998 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.407, 48.859, 101.704 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.220 - 1.900 |
R-factor | 0.1989 |
Rwork | 0.197 |
R-free | 0.23600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xbw |
RMSD bond length | 0.007 |
RMSD bond angle | 0.772 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.220 | 1.940 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.064 | 0.901 |
Rmeas | 0.070 | 1.003 |
Rpim | 0.028 | 0.432 |
Number of reflections | 18723 | 1129 |
<I/σ(I)> | 12.7 | 1.8 |
Completeness [%] | 99.1 | 95.2 |
Redundancy | 6.4 | |
CC(1/2) | 0.997 | 0.556 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 23 mg/mL IsdG (1:1) 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD, 0.02 M 1,6-hexanediol, 0.02 M 1-butanol, 0.02 M (RS)-1,2-propanediol, 0.02 M 2-propanol, 0.02 M 1,4-butanediol, 0.02 M 1,3-propanediol, 0.1 M MES/imidazole pH 6.5 |