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8ARA

Heterologous Complex of Aeromonas hydrophila Type III secretion substrate AscX with Yersinia enterocolitica chaperone YscY

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2020-10-20
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9919
Spacegroup nameP 21 21 21
Unit cell lengths44.318, 94.852, 101.369
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution44.700 - 2.300
R-factor0.1929
Rwork0.190
R-free0.24260
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7qih
RMSD bond length0.003
RMSD bond angle0.470
Data reduction softwareXDS (20200131)
Data scaling softwareSTARANISO (2.3.92 (17-Feb-2023))
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.20.1_4487)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]94.8502.420
High resolution limit [Å]2.3002.300
Rmerge0.1650.884
Rmeas0.1740.938
Rpim0.0560.307
Number of reflections14883744
<I/σ(I)>113
Completeness [%]75.829
Redundancy9.48.9
CC(1/2)0.9970.859
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5277reservoir solution: 0.2 M sodium acetate, 0.1 M sodium citrate pH 5.5, 10 %(w/v) PEG4000; protein: 10 mg/mL in 20 mM Tris pH 8.0, 150 mM NaCl, 5 mM TCEP; drop size: 0.66 uL protein + 0.33 uL reservoir

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PDB entries from 2024-07-17

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