8AOM
Complex of PD-L1 with VHH1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-1 |
Synchrotron site | ESRF |
Beamline | MASSIF-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-09-09 |
Detector | DECTRIS PILATUS3 S 1M |
Wavelength(s) | 0.965459 |
Spacegroup name | I 21 3 |
Unit cell lengths | 149.512, 149.512, 149.512 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.324 - 2.202 |
Rwork | 0.208 |
R-free | 0.24470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zqk |
RMSD bond length | 0.009 |
RMSD bond angle | 1.611 |
Data reduction software | XDS |
Data scaling software | Aimless |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.324 | 47.280 | 2.270 |
High resolution limit [Å] | 2.200 | 9.080 | 2.200 |
Rmerge | 0.072 | 0.043 | 1.930 |
Rmeas | 0.083 | 0.049 | 2.244 |
Rpim | 0.039 | 0.022 | 1.116 |
Number of reflections | 28213 | 436 | 2424 |
<I/σ(I)> | 10.2 | ||
Completeness [%] | 99.9 | ||
Redundancy | 7.6 | 7.4 | 7.1 |
CC(1/2) | 0.993 | 0.978 | 0.287 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291 | 0.1 M MOPS, pH 7.5, and 12% (w/v) PEG 8000 |