8AKB
Human Sirt6 in complex with ADP-ribose and fragment 4-nitrocatechol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-05 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 63 |
Unit cell lengths | 90.974, 90.974, 144.316 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.060 - 2.130 |
R-factor | 0.2136 |
Rwork | 0.211 |
R-free | 0.26080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5mf6 |
RMSD bond length | 0.004 |
RMSD bond angle | 1.302 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.110 | 2.260 |
High resolution limit [Å] | 2.130 | 2.130 |
Rmeas | 0.240 | 2.600 |
Number of reflections | 37821 | 6010 |
<I/σ(I)> | 6.89 | 0.67 |
Completeness [%] | 99.8 | 98.7 |
Redundancy | 6.8 | 6.4 |
CC(1/2) | 0.993 | 0.310 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.7 | 293 | 1.6 M (NH4)2SO4, 10% PEG 400, and Bis-Tris buffer pH 5.7 |