8AGG
Structure of the Legionella phosphocholine hydrolase Lem3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-11-04 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976240 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 78.022, 78.022, 382.014 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 66.540 - 3.600 |
R-factor | 0.2643 |
Rwork | 0.263 |
R-free | 0.29880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Lem3_apo |
RMSD bond length | 0.001 |
RMSD bond angle | 0.376 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.570 | 3.940 |
High resolution limit [Å] | 3.600 | 3.600 |
Rmerge | 0.171 | 1.076 |
Number of reflections | 8684 | 2009 |
<I/σ(I)> | 14.2 | 3.8 |
Completeness [%] | 98.7 | 99.7 |
Redundancy | 24.6 | 24.6 |
CC(1/2) | 0.994 | 0.673 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | MES 0.1M pH 5, PEG6000 5% |