8AE4
Crystal structure of human legumain in complex with Clitocypin 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-09-30 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 42.467, 63.628, 85.532 |
Unit cell angles | 90.00, 102.06, 90.00 |
Refinement procedure
Resolution | 41.530 - 1.790 |
R-factor | 0.1923 |
Rwork | 0.192 |
R-free | 0.20790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7o50 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.024 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 41.820 | 1.900 |
High resolution limit [Å] | 1.790 | 1.790 |
Rmeas | 0.140 | 1.460 |
Number of reflections | 40893 | 5729 |
<I/σ(I)> | 11.21 | 1.16 |
Completeness [%] | 97.0 | |
Redundancy | 7.74 | |
CC(1/2) | 0.990 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M sodium citrate pH 4.5, 20% PEG 4000 |