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8ADX

Structure of the Reconstructed Ancestor of Phenolic Acid Decarboxylase AncPAD55

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2021-11-06
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.967700
Spacegroup nameP 1 21 1
Unit cell lengths57.737, 104.847, 81.495
Unit cell angles90.00, 109.86, 90.00
Refinement procedure
Resolution43.270 - 1.600
Rwork0.188
R-free0.23540
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4alb
RMSD bond length0.014
RMSD bond angle1.798
Data reduction softwareAutoProcess
Data scaling softwareAutoProcess
Phasing softwarePHENIX
Refinement softwareREFMAC (5.8.0405)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]43.27043.2701.620
High resolution limit [Å]1.6008.7401.600
Rmerge0.0590.0430.347
Rmeas0.0810.0610.466
Rpim0.0550.0430.309
Number of reflections1168144044575022
<I/σ(I)>10.6
Completeness [%]96.6
Redundancy3.52.73.5
CC(1/2)0.9920.9860.856
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION289Protein in 10mM MES, 150mM NaCl, pH6 INDEX Screen add1: Prot 9 mg/ml add2: Prot 6,75 mg/ml add3: Prot 4,5 mg/ml all drops 1 microliter drop1: 0.5 add1 + 0.5 screen Chrystal: INDEX Screen Condition 5 0.1 M HEPES pH 7.5 & 2.0 Ammonium sulfate

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PDB entries from 2024-10-16

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