8ADB
Viral tegument-like DUBs
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 101.766, 101.766, 63.204 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 51.360 - 1.730 |
R-factor | 0.1684 |
Rwork | 0.167 |
R-free | 0.19280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | WC-VDT1 1ubb |
RMSD bond length | 0.011 |
RMSD bond angle | 1.216 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20_4478) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.000 | 1.840 |
High resolution limit [Å] | 1.730 | 1.730 |
Rmerge | 0.151 | 2.820 |
Rmeas | 0.153 | |
Number of reflections | 39677 | 6346 |
<I/σ(I)> | 11.4 | 1.1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.6 | 19.2 |
CC(1/2) | 0.998 | 0.497 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 298 | 0.1 M BisTris propane pH 7.0, 2.0 M Ammonium citrate tribasic |