8AD0
X-ray structure of Na+-NQR from Vibrio cholerae in different conformation at 3.1 A
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-02-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 89.310, 142.150, 105.930 |
Unit cell angles | 90.00, 109.83, 90.00 |
Refinement procedure
Resolution | 48.120 - 3.110 |
R-factor | 0.2505 |
Rwork | 0.248 |
R-free | 0.28780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4P6V |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1-4487) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.120 | 48.120 | 3.300 |
High resolution limit [Å] | 3.100 | 10.000 | 3.100 |
Rmerge | 0.088 | 0.026 | 1.995 |
Rmeas | 0.104 | 0.031 | 2.365 |
Total number of observations | 153823 | ||
Number of reflections | 44650 | 1360 | 7312 |
<I/σ(I)> | 9.01 | 38.62 | 0.7 |
Completeness [%] | 98.7 | 97.3 | 94.6 |
Redundancy | 3.445 | 3.24 | 3.432 |
CC(1/2) | 0.998 | 0.998 | 0.320 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277 | 40 mM KSCN, 21.0% PEG 2000MME, 100 mM Tris-acetic acid, 8% 1-propanol |