8ABV
Crystal structure of SpLdpA in complex with erythro-DGPD
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | DIAMOND BEAMLINE I03 |
| Synchrotron site | Diamond |
| Beamline | I03 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2022-02-05 |
| Detector | DECTRIS EIGER2 XE 16M |
| Wavelength(s) | 0.9763 |
| Spacegroup name | P 3 2 1 |
| Unit cell lengths | 71.281, 71.281, 86.922 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 86.922 - 1.683 |
| Rwork | 0.148 |
| R-free | 0.17680 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | NaLdpA |
| RMSD bond length | 0.015 |
| RMSD bond angle | 1.879 |
| Data reduction software | autoPROC |
| Data scaling software | STARANISO |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 86.922 | 1.782 |
| High resolution limit [Å] | 1.683 | 1.683 |
| Rmerge | 0.194 | 2.506 |
| Rpim | 0.044 | 0.587 |
| Number of reflections | 23171 | 1160 |
| <I/σ(I)> | 13.3 | 1.4 |
| Completeness [%] | 86.5 | 58.7 |
| Redundancy | 19.9 | 19 |
| CC(1/2) | 0.999 | 0.599 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 293 | 30% PEG 4000, 0.2 M lithium sulfate, 0.1 M Tris pH 8.5 |
