8A3P
Structure of human Fy-5.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-19 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.968 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 94.619, 99.573, 62.158 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.309 - 2.700 |
R-factor | 0.2247 |
Rwork | 0.220 |
R-free | 0.26680 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1u9c |
RMSD bond length | 0.006 |
RMSD bond angle | 0.894 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.21) |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.310 | 47.310 | 2.850 |
High resolution limit [Å] | 2.700 | 8.540 | 2.700 |
Rmerge | 0.047 | 0.603 | |
Rmeas | 0.094 | 0.050 | 0.636 |
Rpim | 0.031 | 0.017 | 0.201 |
Total number of observations | 79865 | 2526 | 12118 |
Number of reflections | 8339 | 303 | 1205 |
<I/σ(I)> | 13.4 | 33.6 | 3.2 |
Completeness [%] | 99.6 | 99.4 | 99.9 |
Redundancy | 9.6 | 8.3 | 10.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M MES, pH 5.0, 0.8 M Ammonium sulfate |