8A2L
X-ray structure of TRIL-encapsulated human heavy chain ferritin
This is a non-PDB format compatible entry.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ELETTRA BEAMLINE 11.2C |
Synchrotron site | ELETTRA |
Beamline | 11.2C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-25 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0001 |
Spacegroup name | F 4 3 2 |
Unit cell lengths | 183.060, 183.060, 183.060 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 105.690 - 2.301 |
Rwork | 0.171 |
R-free | 0.22360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5n27 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.422 |
Data reduction software | autoPROC |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 105.690 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.200 | 1.800 |
Rmeas | 1.000 | |
Rpim | 0.059 | 0.371 |
Number of reflections | 12183 | 607 |
<I/σ(I)> | 0.711 | |
Completeness [%] | 99.9 | 100 |
Redundancy | 20 | 15 |
CC(1/2) | 0.998 | 0.827 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 9 | 293 | 2.0 M magnesium chloride, 0.1 M bicine buffer pH 9.0 |