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8A24

Lysophospholipase PlaA from Legionella pneumophila str. Corby - iodide soak

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2018-02-22
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)1.7712
Spacegroup nameP 31 2 1
Unit cell lengths81.852, 81.852, 68.210
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution70.890 - 2.360
R-factor0.2306
Rwork0.228
R-free0.27920
Structure solution methodSAD
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwareHKL2Map
Refinement softwarePHENIX (1.20_4459)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]70.89070.8902.490
High resolution limit [Å]2.3607.4802.360
Rmerge0.1890.0801.821
Rmeas0.1920.0811.846
Rpim0.0310.0130.297
Total number of observations4273031429560109
Number of reflections111473981593
<I/σ(I)>21.474.22.5
Completeness [%]100.099.9100
Redundancy38.335.937.7
CC(1/2)0.9990.9990.844
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529214.7% (w/v) PEG3350, 1% (w/v) PEG 1K, 0.5% (w/v) PEG200, 8.9% (v/v) Tacsimate pH 5, 200 mM NH4I, 1 mM CaCl2 and 1 mM MgCl2; cryoprotection and iodide soaking for iodide-SAD: 10% (v/v) (2R,3R)-(-)-2,3-butandiole, 16% (w/v) PEG3350, 6% (v/v) Tacsimate pH 5, 920 mM NH4I

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PDB entries from 2024-08-14

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