8A1K
Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with ebsulfur analogue 15
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-23 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.977, 95.169, 75.624 |
Unit cell angles | 90.00, 92.35, 90.00 |
Refinement procedure
Resolution | 48.409 - 1.750 |
R-factor | 0.1763 |
Rwork | 0.175 |
R-free | 0.20420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6rrm |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 60.900 | 60.940 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.063 | 0.028 | 0.773 |
Rmeas | 0.069 | 0.030 | 0.840 |
Rpim | 0.027 | 0.012 | 0.326 |
Number of reflections | 86825 | 4430 | 4323 |
<I/σ(I)> | 17.7 | 77.7 | 1 |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 6.6 | 7.1 | 6.6 |
CC(1/2) | 0.997 | 0.991 | 0.794 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2 M Ammonium nitrate, 20% PEG 3350 |