8A1J
Crystal structure of the transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with maleimide analogue 3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-02 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.190, 94.010, 75.280 |
Unit cell angles | 90.00, 92.61, 90.00 |
Refinement procedure
Resolution | 41.620 - 2.550 |
R-factor | 0.2371 |
Rwork | 0.236 |
R-free | 0.26840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6rrm |
Data reduction software | XDS |
Data scaling software | xia2 |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.010 | 47.010 | 2.610 |
High resolution limit [Å] | 2.540 | 11.360 | 2.540 |
Rmerge | 0.241 | 0.038 | 1.953 |
Rmeas | 0.262 | 0.042 | 2.137 |
Number of reflections | 27561 | 335 | 1933 |
<I/σ(I)> | 7.4 | 28.9 | 1 |
Completeness [%] | 97.8 | 98.1 | 93.1 |
Redundancy | 6.8 | 6.4 | 6 |
CC(1/2) | 0.987 | 0.998 | 0.625 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.2 M Ammonium nitrate, 20% PEG 3350 |