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8ZV9

Complex structure of HLA2402 with recognizing SARS-CoV-2 Y453F epitope NYNYLFRLF

Replaces:  8IF1
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL19U1
Synchrotron siteSSRF
BeamlineBL19U1
Temperature [K]100
Detector technologyPIXEL
Collection date2022-01-10
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97852
Spacegroup nameP 21 21 21
Unit cell lengths47.060, 167.490, 168.580
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.330 - 2.600
R-factor0.2464
Rwork0.244
R-free0.28950
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5hgd
RMSD bond angle19.056
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.21_5207: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.33011.6202.670
High resolution limit [Å]2.6008.2202.600
Rmerge0.1070.0361.181
Rmeas0.1110.0381.230
Number of reflections420709313020
<I/σ(I)>18.43
Completeness [%]99.9
Redundancy14.4
CC(1/2)0.9990.9990.845
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.528720% PEG8000, 0.1 M HEPES 7.5

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