8YK4

Structure of SARS-CoV-2 RBD and antibody NT-108

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SPRING-8 BEAMLINE BL32XU
Synchrotron site	SPring-8
Beamline	BL32XU
Temperature [K]	100
Detector technology	PIXEL
Collection date	2021-07-21
Detector	DECTRIS EIGER X 9M
Wavelength(s)	1.00000
Spacegroup name	I 2 2 2
Unit cell lengths	55.152, 149.641, 253.429
Unit cell angles	90.00, 90.00, 90.00

Refinement procedure

Resolution	48.350 - 3.200
R-factor	0.244
Rwork	0.243
R-free	0.26710
Structure solution method	MOLECULAR REPLACEMENT
RMSD bond length	0.001
RMSD bond angle	0.401
Data reduction software	XDS (1.18_3845)
Data scaling software	Aimless (1.18_3845)
Refinement software	PHENIX (1.20.1)

Data quality characteristics

	Overall	Outer shell
Low resolution limit [Å]	48.350	3.420
High resolution limit [Å]	3.200	3.200
Number of reflections	17765	3153
<I/σ(I)>	5.7
Completeness [%]	99.6
Redundancy	9.4
CC(1/2)	0.987	0.522

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1M CHES pH9.5, 20% PEG8000