Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8YFI

TRIP4 ASCH domain in complex with a 12bp dsDNA (5'-TGAGGTACCTCA-3')

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL18U1
Synchrotron siteSSRF
BeamlineBL18U1
Temperature [K]100
Detector technologyPIXEL
Collection date2023-03-15
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9792
Spacegroup nameP 61 2 2
Unit cell lengths66.263, 66.263, 199.250
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution33.131 - 2.020
R-factor0.2061
Rwork0.204
R-free0.24880
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.008
RMSD bond angle0.977
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.17.1_3660: ???))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.050
High resolution limit [Å]2.0205.4802.020
Rmerge0.0620.0250.710
Rmeas0.0680.0280.773
Rpim0.0270.0120.301
Total number of observations109981
Number of reflections178971031866
<I/σ(I)>4.3
Completeness [%]99.796.599.8
Redundancy6.15.26.4
CC(1/2)0.9990.9990.858
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP289.152.0 M (NH4)2SO4

227344

PDB entries from 2024-11-13

PDB statisticsPDBj update infoContact PDBjnumon