8XK7
binary complex of DNA polymerase SFM4-3 recognizing C2 methyoxy nucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-12-08 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 61.610, 65.628, 107.378 |
Unit cell angles | 90.00, 103.51, 90.00 |
Refinement procedure
Resolution | 24.410 - 2.000 |
R-factor | 0.19347 |
Rwork | 0.192 |
R-free | 0.23110 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.005 |
RMSD bond angle | 1.363 |
Data reduction software | HKL-3000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0352) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 2.000 | 5.430 | 2.000 |
Rmerge | 0.135 | 0.106 | 0.586 |
Rmeas | 0.148 | 0.117 | 0.640 |
Rpim | 0.060 | 0.049 | 0.255 |
Total number of observations | 343365 | ||
Number of reflections | 55909 | 2856 | 2777 |
<I/σ(I)> | 4.3 | ||
Completeness [%] | 98.8 | 96.7 | 99.7 |
Redundancy | 6.1 | 5.6 | 6.3 |
CC(1/2) | 0.974 | 0.989 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 0.2 M lithium sulfate monohydrate, 0.1 M HEPES pH 7.5, and 28% PEG 3350 |