8W4T
Crystal structure of PDE5A in complex with a novel inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-05-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 74.776, 74.776, 131.889 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 32.524 - 2.199 |
R-factor | 0.2224 |
Rwork | 0.220 |
R-free | 0.26840 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.002 |
RMSD bond angle | 0.428 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.240 |
High resolution limit [Å] | 2.199 | 5.970 | 2.200 |
Rmerge | 0.109 | 0.042 | 2.549 |
Rmeas | 0.112 | 0.043 | 2.638 |
Rpim | 0.026 | 0.011 | 0.672 |
Number of reflections | 22346 | 1237 | 1072 |
<I/σ(I)> | 9.1 | ||
Completeness [%] | 100.0 | 99.4 | 100 |
Redundancy | 19 | 17.7 | 14.7 |
CC(1/2) | 0.990 | 0.998 | 0.712 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 0.1 M Tris-HCl, 0.2 M MgSO4, 20% PEG 3350 |