8W1F
Crystal Structure of DPS-like protein PA4880 from Pseudomonas aeruginosa (dodecamer, Mg bound)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 19-ID |
Synchrotron site | NSLS-II |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-03-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 215.790, 215.790, 277.540 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 31.270 - 3.000 |
R-factor | 0.1804 |
Rwork | 0.179 |
R-free | 0.20360 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 0.870 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.21rc1_5156: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.940 | 3.050 |
High resolution limit [Å] | 3.000 | 3.000 |
Rmerge | 0.202 | 1.798 |
Rmeas | 0.209 | 1.861 |
Rpim | 0.055 | 0.476 |
Total number of observations | 1874799 | 96579 |
Number of reflections | 130805 | 6414 |
<I/σ(I)> | 12.1 | 1.8 |
Completeness [%] | 100.0 | |
Redundancy | 14.3 | 15.1 |
CC(1/2) | 0.997 | 0.719 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 291 | Salt Rx G2: 1 M magnesium sulfate, 100 mM Bis-Tris pH 7.0 |