8VNT
Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mg2+ for 1800s
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-06-26 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.1271 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 114.129, 114.129, 88.740 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 33.020 - 1.620 |
R-factor | 0.1779 |
Rwork | 0.177 |
R-free | 0.19760 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.060 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 33.020 | 33.020 | 1.710 |
High resolution limit [Å] | 1.620 | 4.830 | 1.620 |
Rmerge | 0.096 | 0.042 | 1.005 |
Rmeas | 0.101 | 0.044 | 1.057 |
Number of reflections | 165081 | 6213 | 26218 |
<I/σ(I)> | 16.69 | ||
Completeness [%] | 99.6 | ||
Redundancy | 20.2 | ||
CC(1/2) | 0.999 | 0.999 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 298 | 0.2 M Sodium Malonate, PEG 3350, 0.1 M MES |