8VJV
Structure of Human Neurolysin in complex with dynorphin A8(1-8) peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-29 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97912 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 143.168, 60.116, 95.734 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 95.730 - 2.120 |
R-factor | 0.2148 |
Rwork | 0.213 |
R-free | 0.24920 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.001 |
RMSD bond angle | 0.400 |
Data reduction software | XDS |
Data scaling software | STARANISO |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 95.734 | 2.244 |
High resolution limit [Å] | 2.120 | 2.123 |
Rmerge | 0.138 | 2.326 |
Rmeas | 0.146 | 2.462 |
Rpim | 0.047 | 0.798 |
Total number of observations | 19296 | |
Number of reflections | 42142 | 2090 |
<I/σ(I)> | 10.3 | 1.4 |
Completeness [%] | 88.7 | |
Redundancy | 9.5 | 9.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 17.5 ~ 30 % polyethylene glycol 3,350 and 50 ~ 125 mM Bis-Tris HCl buffer, pH 6.5 |