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8VEI

De novo designed colic acid binder CHD_r1

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-C
Synchrotron siteAPS
Beamline24-ID-C
Temperature [K]100
Detector technologyPIXEL
Collection date2023-02-09
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97911
Spacegroup nameC 2 2 21
Unit cell lengths46.242, 57.819, 85.120
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution42.560 - 2.030
R-factor0.231
Rwork0.227
R-free0.26380
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.002
RMSD bond angle0.432
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]46.2402.180
High resolution limit [Å]2.0302.030
Rmerge0.2471.420
Rpim0.069
Number of reflections76721480
<I/σ(I)>9.71.8
Completeness [%]99.899.6
Redundancy12.812.8
CC(1/2)0.9980.831
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP8.52930.1 M Tris/Biocine pH 8.5, 25% v/v 2-methyl-2,4-pentanediol (MPD); 25% PEG1000; 25% w/v PEG 3350 and 0.093 MSodium fluoride; 0.3 M Sodium bromide; 0.3 M Sodium iodide

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PDB entries from 2024-10-09

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