8VCW
X-Ray Crystal Structure of the biotin synthase from B. obeum
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2022-10-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0,9793 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.209, 50.776, 161.878 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.450 - 1.350 |
R-factor | 0.151 |
Rwork | 0.150 |
R-free | 0.17310 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.016 |
RMSD bond angle | 2.763 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | PHENIX ((1.20.1_4487: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.940 | 1.370 |
High resolution limit [Å] | 1.350 | 1.350 |
Rmerge | 0.067 | 0.436 |
Rmeas | 0.076 | 0.535 |
Rpim | 0.036 | 0.304 |
Number of reflections | 67982 | 2523 |
<I/σ(I)> | 12 | 2.4 |
Completeness [%] | 96.9 | 75 |
Redundancy | 4.1 | 2.6 |
CC(1/2) | 0.998 | 0.741 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.5 | 298 | 0.4uL protein plus 0.4 uL 100mM Bis-Tri pH 5.5, 25% PEG 3350, 0.2M NaCl equilibrated against a well of 0.5M LiCl |