8V4T
The Native DNA 16-mer sequence 5'-GCTGCGTTAACGCAGC-3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | NSLS-II BEAMLINE 17-ID-2 |
Synchrotron site | NSLS-II |
Beamline | 17-ID-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-10-15 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.979338 |
Spacegroup name | H 3 2 |
Unit cell lengths | 38.324, 38.324, 163.022 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.740 - 1.470 |
R-factor | 0.1968 |
Rwork | 0.195 |
R-free | 0.21070 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.013 |
RMSD bond angle | 1.503 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.740 | 1.523 |
High resolution limit [Å] | 1.470 | 1.470 |
Rmerge | 0.054 | 0.498 |
Rmeas | 0.057 | 0.524 |
Rpim | 0.160 | |
Number of reflections | 8251 | 802 |
<I/σ(I)> | 23.58 | 4.52 |
Completeness [%] | 99.6 | 100 |
Redundancy | 10.7 | 10.6 |
CC(1/2) | 0.999 | 0.936 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.6 | 295 | 10mM HEPES, pH=8.6, 600mM CaCl2, 38% PEG200 mixed 1:1 with 1mM DNA duplex |