Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8UP8

Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F, complex with L-Asp)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2022-04-15
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameP 21 21 21
Unit cell lengths72.145, 77.640, 115.183
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution38.970 - 1.900
R-factor0.17912
Rwork0.178
R-free0.22476
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.011
RMSD bond angle1.686
Data reduction softwareHKL-2000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.930
High resolution limit [Å]1.9005.1501.900
Rmerge0.0790.0420.544
Rmeas0.0840.0450.566
Rpim0.0260.0150.156
Number of reflections5078627202496
<I/σ(I)>9.5
Completeness [%]99.097.8100
Redundancy11.710.513
CC(1/2)1.0000.9970.947
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 uL 20 mg/mL protein in 50 mM HEPES, 150 mM sodium chloride, 20 mM L-Asp + 0.2 uL reservoir (Molecular Dimensions Morpheus F9, 20 mM L-Asp, pH 8.5)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon