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8UP3

Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 22-ID
Synchrotron siteAPS
Beamline22-ID
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-05
DetectorDECTRIS EIGER X 16M
Wavelength(s)1.0
Spacegroup nameC 1 2 1
Unit cell lengths245.644, 63.185, 92.968
Unit cell angles90.00, 103.42, 90.00
Refinement procedure
Resolution39.400 - 1.760
R-factor0.16498
Rwork0.164
R-free0.21599
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.012
RMSD bond angle1.741
Data reduction softwareHKL-2000
Data scaling softwareHKL-3000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]40.00040.0001.780
High resolution limit [Å]1.7504.7501.750
Rmerge0.0800.0360.994
Rmeas0.0920.0411.145
Rpim0.0430.0190.560
Total number of observations546072
Number of reflections13256067336556
<I/σ(I)>11.6
Completeness [%]97.195.397
Redundancy4.14.23.9
CC(1/2)0.9940.9880.627
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2930.2 uL 18 mg/mL protein in 50 mM HEPES, pH 7, 150 mM sodium chloride + 0.2 uL reservoir (Molecular Dimensions Morpheus A2, pH 6.5)

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PDB entries from 2024-05-15

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