8UP3
Structure of atypical asparaginase from Rhodospirillum rubrum (mutant Y21F)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-10-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 245.644, 63.185, 92.968 |
Unit cell angles | 90.00, 103.42, 90.00 |
Refinement procedure
Resolution | 39.400 - 1.760 |
R-factor | 0.16498 |
Rwork | 0.164 |
R-free | 0.21599 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.012 |
RMSD bond angle | 1.741 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.080 | 0.036 | 0.994 |
Rmeas | 0.092 | 0.041 | 1.145 |
Rpim | 0.043 | 0.019 | 0.560 |
Total number of observations | 546072 | ||
Number of reflections | 132560 | 6733 | 6556 |
<I/σ(I)> | 11.6 | ||
Completeness [%] | 97.1 | 95.3 | 97 |
Redundancy | 4.1 | 4.2 | 3.9 |
CC(1/2) | 0.994 | 0.988 | 0.627 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2 uL 18 mg/mL protein in 50 mM HEPES, pH 7, 150 mM sodium chloride + 0.2 uL reservoir (Molecular Dimensions Morpheus A2, pH 6.5) |