8UAK
Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with Darovasertib (NVP-LXS196) at 2.82-A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-13 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 109.818, 44.532, 85.691 |
Unit cell angles | 90.00, 114.04, 90.00 |
Refinement procedure
Resolution | 39.670 - 2.820 |
R-factor | 0.2077 |
Rwork | 0.206 |
R-free | 0.24300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3iw4 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.339 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.200 | 2.830 |
High resolution limit [Å] | 2.820 | 2.820 |
Rmerge | 0.062 | 0.628 |
Number of reflections | 9293 | 95 |
<I/σ(I)> | 13.3 | 2.6 |
Completeness [%] | 99.3 | |
Redundancy | 3.9 | |
CC(1/2) | 0.986 | 0.743 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 21 mg/mL protein in 50 mM imidazole, 200 mM sodium chloride, 2 mM TCEP, 1 mM NAF, 1% glycerol, pH 8.0 against 0.1 M Bis-Tris, pH 5.5, 18% PEG3350, 0.2 M magnesium chloride |