8U6X
ATP-dependent DNA ligase Lig E from Neisseria gonorrhoeae
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2023-07-23 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.953724 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 39.398, 167.680, 51.159 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.930 - 2.440 |
R-factor | 0.2346 |
Rwork | 0.230 |
R-free | 0.27950 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.514 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.20.1_4487) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.930 | 2.527 |
High resolution limit [Å] | 2.440 | 2.440 |
Rmerge | 0.108 | 1.080 |
Rmeas | 0.114 | 1.146 |
Rpim | 0.038 | 0.376 |
Number of reflections | 13286 | 1269 |
<I/σ(I)> | 11.88 | 1.64 |
Completeness [%] | 99.9 | 99.61 |
Redundancy | 8.7 | 8.8 |
CC(1/2) | 0.997 | 0.694 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 291.15 | 0.5 M potassium thiocyanate, 0.1 M Bis Tris Propane pH 8.0 |