8U52
Co-crystal structure of human transthyretin conjugated to the stilbene substructure derived from reaction with the fluorogenic covalent kinetic stabilizer A2
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 5.0.1 |
| Synchrotron site | ALS |
| Beamline | 5.0.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-12-20 |
| Detector | DECTRIS PILATUS3 2M |
| Wavelength(s) | 0.97741 |
| Spacegroup name | P 21 21 2 |
| Unit cell lengths | 42.960, 85.201, 63.751 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 42.640 - 1.500 |
| R-factor | 0.16629 |
| Rwork | 0.165 |
| R-free | 0.19389 |
| Structure solution method | MOLECULAR REPLACEMENT |
| RMSD bond length | 0.046 |
| RMSD bond angle | 2.890 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 42.640 | 1.580 |
| High resolution limit [Å] | 1.500 | 1.500 |
| Rpim | 0.008 | 0.136 |
| Number of reflections | 36591 | 4326 |
| <I/σ(I)> | 42.8 | 4.9 |
| Completeness [%] | 95.7 | |
| Redundancy | 12.4 | |
| CC(1/2) | 1.000 | 0.940 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 298 | The WT-TTR was concentrated to 4 mg/mL in 10 mM sodium phosphate, 100 mM KCl, at pH 7.6 and co-crystallized at room temperature using the vapor diffusion sitting drop method. |






